seedtop -k pattern.txt -d refseq_protein -p patternp -o db.out seqno=892602 gi|33859524|ref|NP_034048.1| ID Cyclic nucleotide-binding domain signature 1 PA [LIVM]-[VIC]-x-{H ...
http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/seedtop.html

In general, the seedp option is more useful than the standard patternp option ONLY when the pattern occurs K > 1 times in the sequence AND the user is interested in matching to J ...
http://www.ncbi.nlm.nih.gov/blast/html/PHIsyntax.html

The following notation is used: L The number of layers. N ' The number of neurons inlayer'. P The number of training patterns. u p 1j The value of input neuronj (inlayer 1) for patternp (j=1 N ...
http://q12.org/phd/thesis/appendixC.pdf

... cairo_pattern_reference * Signature: (J)V */ JNIEXPORT void JNICALL Java_org_cairographics_cairo_CairoPattern_cairo_1pattern_1reference (JNIEnv *env, jclass me, jlong patternp ...
http://lists.cairographics.org/archives/cairo-commit/2004-Ap ...

The output from the patternp can be used for this purpose. This specifies which pattern is to be used during the search. An actual command line and pattern file is listed below.
http://pro.genomics.purdue.edu/blastdocs/seedtop.html